Asclepios Project || INRIA Sophia Antipolis || INRIA France

Publications of Olivier Clatz

Thesis

  1. Olivier Clatz. Modèles biomécaniques et physio-pathologiques pour l'analyse d'images cérébrales. Thèse de sciences, École des Mines de Paris, February 2006. [PDF]


Articles in journal or book chapters

  1. Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, and Maxime Sermesant. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. In From semantics to computer science: essays in honor of Gilles Kahn. Cambridge University Press, 2008. [PDF]


  2. Neculai Archip, Olivier Clatz, Stephen Whalen, Simon Dimaio, Peter Black, Alexandra Golby, Ferenc Jolesz, and Simon Warfield. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery.. Neurosurgery, 62(3 supl. 1):209-15, March 2008.


  3. Pierre-Yves Bondiau, Olivier Clatz, Maxime Sermesant, Pierre-Yves Marcy, Hervé Delingette, Marc Frenay, and Nicholas Ayache. Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging.. Phys Med Biol, 53(4):879-93, February 2008.


  4. Emmanuel Mandonnet, Johan Pallud, Olivier Clatz, Hugues Duffau, and Laurent Capelle. Computational Modelling of the WHO Grade II Glioma Dynamics: Principles and Applications to Surgical Strategy. Neurosurgical Review, 2008. Note: In Press.


  5. Elsa Angelini, Olivier Clatz, Emmanuel Mandonnet, Ender Konukoglu, Laurent Capelle, and Hugues Duffau. Glioma Dynamics and Computational Models: A Review of Segmentation, Registration, and In Silico Growth Algorithms and their Clinical Applications. Current Medical Imaging Reviews,, 3:262-176, 2007. [PDF]


  6. Neculai Archip, Olivier Clatz, Stephen Whalen, Dan Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc Jolesz, Alexandra Golby, Peter Black, and Simon Warfield. Non-rigid alignment of preoperative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage, 35(2):609-24, April 2007. [PDF]


  7. Olivier Clatz, Stéphane Litrico, Hervé Delingette, Philippe Paquis, and Nicholas Ayache. Dynamic Model of Communicating Hydrocephalus for Surgery Simulation. IEEE Transactions on Biomedical Engineering, 54(4):755-758, April 2007. [PDF] [doi:10.1109/TBME.2006.890146]


  8. Olivier Clatz, Emmanuel Mandonnet, Stéphane Chanalet, Christine Lebrun, Ender Konukoglu, Hervé Delingette, Nicholas Ayache, and Pierre-Yves Bondiau. Modèles Biomathématiques de Croissance Des Gliomes : Recherche en Informatique et Perspectives en Neuro-oncologie.. Neurologies, 9(93):665-667, 2006. [PDF]


  9. Gilles Scarella, Olivier Clatz, Stéphane Lanteri, Grégory Beaume, Steve Oudot, Jean-Philippe Pons, Serge Piperno, Patrick Joly, and Joe Wiart. Realistic numerical modelling of human head tissue exposure to electromagnetic waves from cellular phones. Comptes Rendus de l'Académie des Sciences - Physics, 7(5):501-508, June 2006. [PDF]


  10. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc Jolesz, Nicholas Ayache, and Simon Warfield. Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI. IEEE Transactions on Medical Imaging, 24(11):1417-1427, Nov. 2005. [PDF] Keyword(s): Non-rigid registration, intra-operative magnetic resonance imaging, finite element model, brain shift.


  11. Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, and Nicholas Ayache. Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect. IEEE Transactions on Medical Imaging, 24(10):1334-1346, October 2005. [PDF] Keyword(s): Tumor, brain, growth, model, simulation.


  12. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Création d'un Modèle Biomécanique Spécifique du Cerveau par l'Analyse d'Images et son Application à la Neurochirurgie Stéréotaxique. Mecanique et Industrie, 4(4):429-433, 2003. Note: Numéro spécial CFM 2003. [PDF]


Conference articles

  1. Olivier Commowick, Pierre Fillard, Olivier Clatz, and Simon K. Warfield. Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients. In Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), Lecture Notes in Computer Science, New York, USA, September 2008. Springer-Verlag. Note: To appear.[PDF]


  2. Boon Thye Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, and Olivier Clatz. DTI Registration with Exact Finite-Strain Differential. In Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 2008. IEEE. [PDF]


  3. Franciso Javier Sanchez Castro, Olivier Clatz, Julien Dauguet, Neculai Archip, Jean-Philippe Thiran, and Simon Warfield. Evaluation Of Brain Image Nonrigid Registration Algorithms Based on Log-Euclidean MR-DTI Consistency Measures. In Proceedings of IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Metro Washington DC, USA, pages 45-48, 2007. [PDF]


  4. Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Daniel Goldberg-Zimring, Dan Kacher, Stephen Whalen, Ron Kikinis, Ferenc Jolesz, Olivier Clatz, Simon K. Warfield, Peter M. Black, and Alexandra Golby. Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. In Proc. 7th International Conference on Computational Science - ICCS, volume 4487 of LNCS, Beijing, China, pages 980-987, May 2007. Springer. [PDF] [doi:10.1007/978-3-540-72584-8]


  5. E. Konukoglu, M. Sermesant, O. Clatz, J.-M. Peyrat, H. Delingette, and N. Ayache. A Recursive Anisotropic Fast Marching Approach to Reaction Diffusion Equation: Application to Tumor Growth Modeling. In Proceedings of the 20th International Conference on Information Processing in Medical Imaging (IPMI'07), volume 4584 of LNCS, pages 686-699, 2-6 July 2007. [PDF]


  6. Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter Black, Olivier Clatz, Alexandra Golby, Ron Kikinis, and Simon K. Warfield. Toward Real-Time, Image Guided Neurosurgery Using Distributed and Grid Computing. In SuperComputing06, Tampa, Florida, USA, November 2006. [PDF]


  7. Olivier Clatz, Stéphane Lanteri, and Serge Piperno. Unstructured mesh solvers for the simulation of electromagnetic wave propagation and induced temperature elevation in living tissues. In 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering, 2006.


  8. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating Tumor Invasion Margins for Physiologically Determined Radiotherapy Regions. In Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, number 4190 of LNCS, pages 338-346, 2-4 October 2006. [PDF] Keyword(s): Tumor growth modeling, Glioma, brain tumors, radiotherapy, hamilton jacobi, DT-MRI, DTI, Diffusion Tensor, fisher kolmogorov, F-KPP.


  9. Ivan Bricault, Simon DiMaio, Olivier Clatz, Sonia Pujol, Kirby Vosburgh, and Ron Kikinis. Computer-Assisted Interventions on liver: Feasibility of the anchor needle technique for real-time targeting of lesions with respiratory motion.. In Surgetica, Chambéry, January 2005. [PDF]


  10. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Modélisation macroscopique de la croissance des tumeurs cérébrales.. In Congrès Français de Mécanique (CFM), Troyes, August 2005. [PDF]


  11. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Nicholas Ayache, Ron Kikinis, Ferenc A. Jolesz, and Simon K. Warfield. Hybrid Formulation of the Model-Based Non-Rigid Registration Problem to Improve Accuracy and Robustness. In J. Duncan and G. Gerig, editors, Proceedings of MICCAI'05, volume 3750 of LNCS, pages 295-302, October 2005. Springer Verlag. [PDF] [doi:DOI:10.1007/11566489_37]


  12. Gilles Scarella, Olivier Clatz, Stéphane Lanteri, Grégory Beaume, Steve Oudot, Jean-Philippe Pons, Serge Piperno, Patrick Joly, and Joe Wiart. Realistic numerical modeling of human head tissues exposure to electromagnetic waves from mobiles phones. In Seventh International Conference on Mathematical and Numerical Aspects of Wave Propagation, Brown University, Rhode Island, June 20-24 2005.


  13. Christopher Wagner, Olivier Clatz, Ross Feller, Douglas Perrin, Hervé Delingette, Nicholas Ayache, and Robert Howe. Integrating Tactile and Force Feedback with Finite Element Models. In International Conference on Robotics and Automation (ICRA'05), Barcelona, April 2005. [PDF]


  14. Olivier Clatz, Pierre Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon Warfield, and Nicholas Ayache. In Silico Tumor Growth: Application to Glioblastomas.. In C. Barillot, D.R. Haynor, and P. Hellier, editors, Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), volume 3217 of LNCS, Saint-Malo, France, pages 337-345, September 2004. Springer Verlag. [PDF]


  15. Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra Golby, Nicholas Ayache, Ron Kikinis, Ferenc Jolesz, and Simon Warfield. Robust Nonrigid Registration to Capture Brain Shift from Intraoperative MRI. In 5th Interventional MRI Symposium, Cambridge, MA. USA, October 2004. [PDF]


  16. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Détermination d'un modèle biomécanique du cerveau par l'analyse d'images : application à la maladie de Parkinson.. In Congrès Français de Mécanique (CFM), 2003. [PDF]


  17. Olivier Clatz, Hervé Delingette, Eric Bardinet, Didier Dormont, and Nicholas Ayache. Patient Specific Biomechanical Model of the Brain: Application to Parkinson's disease procedure.. In N. Ayache and H. Delingette, editors, International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), volume 2673 of Lecture Notes in Computer Science, Juan-les-Pins, France, pages 321-331, 2003. INRIA Sophia Antipolis, Springer-Verlag. [PDF]


  18. Maxime Sermesant, Olivier Clatz, Zhongze Li, Stéphane Lanteri, Hervé Delingette, and Nicholas Ayache. A Parallel Implementation of Non-Rigid Registration Using a Volumetric Biomechanical Model. In J.C. Gee, J.B. A. Maintz, and M. W. Vannier, editors, Second International Workshop on Biomedical Image Registration WBIR'03, volume 2717 of Lecture Notes in Computer Science, Philadelphia, PA, USA, pages 398-407, 2003. Springer-Verlag. [PDF]


  19. Charles Thorpe, Olivier Clatz, David Duggins, Jay Gowdy, Robert MacLachlan, James Miller, Christoph Mertz, Mel Siegel, Chieh-Chih Wangand, and Teruko Yata. Dependable Perception for Robots. In International Advanced Robotics Programme IEEE, Robotics and Automation Society, Seoul, Korea, May 2001. [PDF]


Internal reports

  1. Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Maxime Sermesant, Simon Warfield, Grégoire Malandain, and Nicholas Ayache. Brain Tumor Growth Simulation. Research report 5187, INRIA, 2004. [WWW] [PDF] Keyword(s): tumor, model, glioblastoma, brain, Magnetic Resonance Imaging, growth, model, simulation, finite element, biomechanics, diffusion, infiltration, mass effect, Clinical Target Volume, Gross Tumor Volume.


Miscellaneous

  1. Ender Konukoglu, Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, and Nicholas Ayache. Extrapolating tumor invasion margins for physiologically determined radiotherapy regions. Presented in DIMACS Workshop: Computational Tumor Modeling, 2006.


  2. Olivier Clatz. Analysis and prediction of the brain deformation during a neurosurgical procedure. Rapport de DEA, ENS Cachan, Septembre 2002.